Category: Early Earth (page 2 of 4)

If Bacteria Could Talk


Hawaiian lava cave microbial mats appear to have the highest levels and diversity of genes related to quorum sensing so far.  (Stuart Donachie, University of Hawai`i at Mānoa)

Did you know that many bacteria — some of the oldest lifeforms on Earth — can talk?  Really.

And not only between the same kind of single-cell bacteria, but  back and forth with members of other species, too.

Okay, they don’t talk in words or with sounds at all.  But they definitely communicate in a meaningful and essential way, especially in the microbial mats and biofilms (microbes attached to surfaces surrounded by mucus) that constitute their microbial “cities.”

Their “words” are conveyed via chemical signaling molecules — a chemical language — going from one organism to another,  and are a means to control when genes in the bacterial DNA are turned “on” or “off.”  The messages can then be translated into behaviors to protect or enhance the larger (as in often much, much larger) group.

Called “quorum sensing,” this microbial communication was first identified several decades ago.  While the field remains more characterized by questions than definitive answers, is it clearly growing and has attracted attention in medicine, in microbiology and in more abstract computational and robotics work.

Most recently,  it has been put forward as chemically-induced behavior that can help scientists understand how bacteria living in extreme environments on Earth — and potential on Mars —  survive and even prosper.  And the key finding is that bacteria are most successful when they form communities of microbial mats and biofilms, often with different species of bacteria specializing in particular survival capabilities.

Speaking at the recent Astrobiology Science Conference in Seattle,  Rebecca Prescott, a National Science Foundation  Postdoctoral Research Fellow in Biology said this community activity may make populations of bacteria much more hardy than otherwise might be predicted.


Quorum sensing requires a community. Isolated Bacteria (and Archaea) have nobody to communicate with and so genes that are activated by quorum sensing are not turned “on.”

“To help us understand where microbial life may occur on Mars or other planets, past or present, we must understand how microbial communities evolve and function in extreme environments as a group, rather than single species,” said Prescott,

“Quorum sensing gives us a peek into the interactive world of bacteria and how cooperation may be key to survival in harsh environments,” she said.

Rebecca Prescott  is a National Science Foundation Postdoctoral Fellow in Biology (1711856) and is working with principal investigator Alan Decho of the University of South Carolina on a NASA Exobiology Program grant.

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Starting Life on Another Planet

Inside the planet simulator at McMaster University
A look inside the planet simulator in the Origins of Life laboratory at McMaster University. Within this chamber, the origins of life can be explored on different worlds (McMaster University).

Have you ever wondered if you could kick-start life on another planet? In the Origins of Life laboratory at McMaster University in Canada, there is a machine that allows you to try this very task.

Exactly how life began on the Earth remains heavily debated, but one of the most famous ideas was proposed by Charles Darwin in a letter to a friend in 1871:

“But if (and oh what a big if) we could conceive in some warm little pond with all sorts of ammonia and phosphoric salts…” Darwin began.

In contrast to the vast ocean, a pond would allow simple organic molecules to be concentrated and increase the probability of reactions that would form chains of longer molecules such as RNA; a single-stranded version of DNA that is thought to have been used for genetic information by the earliest forms of life.

warm little pond
Did life begin in warm little ponds such as these? (Katharine Sutliff / Science).

It is highly likely that such warm little ponds would have the necessary ingredients to build such complex molecules. Experiments performed by Stanley Miller and Harold Urey in the 1950s demonstrated that water containing just the basic molecules of methane, ammonia and hydrogen would react to form a wide range of simple organics. Meteorites have also been found to contain similar molecules, proposing an alternative way of populating pools of water on the early Earth.

These ponds should therefore contain plenty of simple organics such as nucleotides, which stack together to form RNA. However, this stacking step turns out to be tricky.

“Anywhere where you have stagnant water and take sample, you will find organic molecules,” explains Maikel Rheinstädter, associate director of McMaster’s Origins Institute. “But you only find the building blocks, not the longer chains. Obviously, something is missing.”

In pond water, molecules are free to move around and potentially meet to initiate a reaction. The problem is that nucleotides carry a negative charge which repels the molecules from one another. While their motion is unconstrained, the nucleotides will therefore not approach close enough to react and form a longer molecule.

The solution is to dry out the pond.

As winter turned to summer on our young planet, shallow pools would have evaporated to leave the molecules suspended in the water lying on the muddy clay bottom.… Read more

A New and Revelatory Window Into Evolution on Earth

A Leanchoilia fossil from at the Qingjiang site in China. A very early arthropod  found with sharply defined appendages is an arthropod and  one of the prime examples of early Cambrian life (D Fu et al., Science 363:1338 (2019)

Virtually every definition of the word “life” includes the capability to undergo Darwinian evolution as a necessary characteristic.  This is true of life on Earth and of thinking about what would constitute life beyond Earth.  If it can’t change, the thinking goes, then it cannot be truly alive.

In addition, evolutionary selection and change occurs within the context of broad planetary systems — the chemical makeup of the atmosphere, the climactic conditions, the geochemistry and more.  If an environment is changing, then the lifeforms that can best adapt to the new conditions are the ones that will survive and prosper.

So evolution is very much part of the landscape that Many Worlds explores — the search for life beyond Earth and effort to understand how life emerged on Earth.  Evolution happens in the context of broad conditions on Earth (and perhaps elsewhere), and finding potential life elsewhere involves understanding the conditions on distant planets and determining if they are compatible with life.

This all came to mind as I read about the discovery of a remarkable collection of fossils alongside a river in China, fossils of soft-bodied creatures that lived a half billion years ago in the later phase of what is termed the the Cambrian explosion.  They are of being compared already with the iconic “Burgess Shale” fossil find in Canada of decades ago, and may well shed equally revelatory light on a crucial time in the evolution of life on Earth.

Artist rendering of Qingjiang life showing characteristics of different early Cambrian taxonomical groups.  More than 50 percent had never been identified before. (ZH Yao and DJ Fu)

The new discovery is reported in the journal Science in a paper authored by Dongjing Fu and a team largely from the Northwest University in Xi’an.  The paper reports on a zoo of Cambrian-era creatures, with more than half of them never identified before in the rock record.

The animals are soft-bodied — making it all the more remarkable that they were preserved — and some bear little resemblance to anything that followed.   Like the Burgess Shale fossils, the Qingjiang discovery is of an entire ecosystem that largely disappeared as more fit (and predatory) animals emerged.… Read more

How Creatures End Up Miles Below the Surface of Earth, and Maybe Mars Too

Poikilolaimus oxycercus is a microscopic nematode, or roundworm, found alive and well more than a mile below the surface in South Africa, where its ancestors had lived for hundreds or thousands of years. (Gaetan Borgonie)


When scientists speculate about possible life on Mars, they generally speak of microbial or other simple creatures living deep below the irradiated and desiccated surface.  While Mars long ago had a substantial period that was wetter and warmer when it also had a far more protective atmosphere,  the surface now is considered to be lethal.

But the suggestion that some potential early Martian life could have migrated into the more protected depths is often discussed as a plausible, if at this point untestable possibility.  In this scenario, some of that primitive subsurface life might even have survived the eons in their buried, and protected, environments.

This thinking has gotten some support in the past decade with the discovery of bacteria and nematodes (roundworms) found as far down as three miles below the surface of South Africa, in water dated as being many thousands or millions years old.  The lifeforms have been discovered by a team that has regularly gone down into the nation’s super-hot gold and platinum mines to search for life coming out of boreholes in the rock face of deep mine tunnels.


Borgonie setting up a water collector for a borehole at the Driefontein mine in the Witwatersrand Basin  of South Africa.  He said he stopped counting his journeys into the deep mines at 50, but that the number now is much higher. (Courtesy of Borgonie)

Now a  new paper describes not only the discovery of additional deep subsurface life, but also tries to explain how the distant ancestors of the worms and bacteria and algae might have gotten there. 

Their conclusion:  many were pulled down when fractures opened in the aftermath of earthquakes and other seismic events.  While many lifeforms were swept down, only a small percentage were able to adapt, evolve and thus survive.

The is how Gaetan Borgonie, lead author of the paper in Scientific Reports, explained it to me via email:

“After the discovery of multicellular animals in the deep subsurface up to 3.8 km (2.5 miles) in South Africa everyone was baffled and asked the question how did they get that deep? This question more or less haunted us for more than a decade as we were unable to get our head around it.Read more

All About Emergence

A swarm of birds act as an emergent whole as opposed to a collection of individual birds. The workings of swarms have been fruitfully studied by artificial life scientists, who look for abstracted insights into life via computers and other techniques. (Walerian Walawski)


If there was a simple meaning of the often-used scientific term “emergence,” then 100-plus scientists wouldn’t have spent four days presenting, debating and not infrequently disagreeing about what it was.

But as last month’s organizers of the Earth-Life Science Institute’s “Comparative Emergence” symposium in Tokyo frequently reminded the participants, those debates and disputes are perfectly fine and to be expected given the very long history and fungibility of the concept.

At the same time, ELSI leaders also clearly thought that the term can have resonance and importance in many domains of science, and that’s why they wanted practitioners to be exposed more deeply to its meanings and powers.

Emergence is a concept commonly used in origins of life research, in complexity and artificial life science; less commonly in chemistry, biology, social and planetary sciences; and — originally – in philosophy. And in the 21st century, it is making a significant comeback as a way to think about many phenomena and processes in the world.

So what is “emergence?” Most simply, it describes the ubiquitous and hugely varied mechanisms by which simple components in nature (or in the virtual or philosophical world) achieve more complexity, and in the process become greater than the sum of all those original parts.

The result is generally novel, often surprising, and sometimes most puzzling – especially since emergent phenomena involve self-organization by the more complex whole.

Think of a collection of ants or bees and how they join leaderless by the many thousands to make something – a beehive, an ant colony – that is entirely different from the individual creatures.


The Eagle nebula is an intense region of star formation, an emergent phenomenon
that clearly creates something novel out of simpler parts. (European Space Observatory.)

Think of the combination of hydrogen and oxygen gases which make liquid water. Think of the folding of proteins that makes genetic information transfer possible. Think of the processes by which bits of cosmic dust clump and clump and clump millions of times over and in time become a planetesimal or perhaps a planet. Think of how the firing of the billions of neurons in your brain results in consciousness.Read more

The Moon-Forming Impact And Its Gifts


Rice University petrologists have found Earth most likely received the bulk of its carbon, nitrogen and other life-essential volatile elements from the planetary collision that created the moon more than 4.4 billion years ago. (Rice University)


The question of how life-essential elements such as carbon, nitrogen and sulfur came to our planet has been long debated and is a clearly important and slippery scientific subject.

Did these volatile elements accrete onto the proto-Earth from the sun’s planetary disk as the planet was being formed?  Did they arrive substantially later via meteorite or comet?  Or was it the cataclysmic moon-forming impact of the proto-Earth and another Mars-sized planet that brought in those essential elements?

Piecing this story together is definitely challenging,  but now there is vigorous support for one hypothesis — that the giant impact brought us the elements would later be used to enable life.

Based on high pressure-temperature experiments, modeling and simulations, a team at Rice University’s Department of Earth, Environmental and Planetary Sciences makes that case in Science Advances for the central role of the proto-planet called Theia.

“From the study of primitive meteorites, scientists have long known that Earth and other rocky planets in the inner solar system are volatile-depleted,” said study co-author Rajdeep Dasgupta. “But the timing and mechanism of volatile delivery has been hotly debated. Ours is the first scenario that can explain the timing and delivery in a way that is consistent with all of the geochemical evidence.”

“What we are saying is that the impactor definitely brought the majority supply of life-essential elements that we see at the mantle and surface today,” Dasgupta wrote in an email.


A schematic depicting the formation of a Mars-sized planet (left) and its differentiation into a body with a metallic core and an overlying silicate reservoir. The sulfur-rich core expels carbon, producing silicate with a high carbon to nitrogen ratio. The moon-forming collision of such a planet with the growing Earth (right) can explain Earth’s abundance of both water and major life-essential elements like carbon, nitrogen and sulfur, as well as the geochemical similarity between Earth and the moon. (Rajdeep Dasgupta; background photo of the Milky Way galaxy is by Deepayan Mukhopadhyay)


Some of their conclusions are based on the finding of a similarity between the isotopic compositions of nitrogen and hydrogen in lunar glasses and in the bulk silicate portions of the Earth. Read more

Time-Traveling in the Australian Outback in Search of Early Earth

This story was written by Nicholas Siegler, Chief Technologist for NASA’s Exoplanet Exploration Program at the Jet Propulsion Laboratory with the help of doctoral student Markus Gogouvitis, at the University of New South Wales, Australia and Georg-August-University in Gottingen, Germany.


These living stromatolites at Shark Bay, Australia are descendants of similar microbial/sedimentary forms once common around the world.  They are among the oldest known repositories of life.  Most stromatolites died off long ago, but remain at Shark Bay because of the high salinity of the water. (Tourism, Western Australia)


This past July I joined a group of geologists, geochemists, microbiologists, and fellow astronomers on a tour of some of the best-preserved evidence for early life.

Entitled the Astrobiology Grand Tour, it was a trip led by Dr. Martin Van Kranendonk, a structural geologist from the University of New South Wales, who had spent more than 25 years surveying Australia’s Pilbara region. Along with his graduate students he had organized a ten-day excursion deep into the outback of Western Australia to visit some of astrobiology’s most renowned sites.

The trip would entail long, hot days of hiking through unmaintained trails on loose surface rocks covered by barb-like bushes called spinifex.  As I was to find out, nature was not going to give up its secrets easily.  And there were no special privileges allocated to astrophysicists from New Jersey.


The route of our journey back in time.  (Google Earth/Markus Gogouvitis /Martin Van Kranendonk)

The state of Western Australia, almost four times the size of the American state of Texas but with less than a tenth of the population (2.6 million), is the site of many of astrobiology’s most heralded sites. For more than three billion years, it has been one of the most stable geologic regions in the world.

It has been ideal for geological preservation due to its arid conditions, lack of tectonic movement, and remoteness. The rock records have in many places survived and are now able to tell their stories (to those who know how to listen).


The classic red rocks of the Pilbara in Western Australia, with the needle sharp spinifex bushes in the foreground. (Nick Siegler, NASA/JPL-Caltech)

Our trip began with what felt like a pilgrimage. We left Western Australia’s largest city Perth and headed north for Shark bsy. It felt a bit like a pilgrimage because the next morning we visited one of modern astrobiology’s highlights – the living stromatolites of Shark Bay.… Read more

Piecing Together The Narrative of Evolution

A reconstruction of the frond-like sea creature Stromatoveris psygmoglena, which lived during the Cambrian explosion of life forms on Earth.  Newfound fossils of Stromatoveris were compared with Ediacaran fossils, and researchers concluded they were all very early animals and that this animal group survived the mass extinction event that occurred between the Ediacaran and Cambrian periods. (Jennifer Hoyal Cuthill.)

An essential characteristic of life is that it evolves. Whether on Earth or potentially Mars, Europa or distant exoplanets, we can assume that whatever life might be present has the capacity and the need to change.

Evolution is intimately tied to the origin-of-life question, which this column often explores.  Having more answers regarding how life might have started on Earth can no doubt help the search for life elsewhere, just as finding life elsewhere could help understand how it started here.

The connection between evolution and exoplanets has an added and essential dimension when it comes to hunting for signatures of distant extraterrestrial life.

Searching for a planet with lots of oxygen and other atmospheric compound in disequilibrium (as on Earth) is certainly a way forward. But it is sobering to realize that those biosignatures would not have been detectable on Earth for most of the time that life has been present.  That’s because large concentrations of oxygen are a relative newcomer to our planet,  product of biological evolution.

With all this in mind, it seems both interesting and useful to look at the work of a researcher studying the fossil record to better understand a particular transition on Earth — the one from simpler organisms to multicellular creatures that can be considered animals.

The surprising, large transitional life of the Ediacaran period, which just preceded the Cambrian explosion of complex life. This grouping is termed the Ediacara assemblage, and existed late in the period.  (John Sibbick)

The researcher is Jennifer Hoyal Cuthill of the University of Cambridge, who I first met at the Earth-Life Science Institute in Tokyo, a unique place where scientists research the origin of Earth and of life on Earth.

She had been included in a group of twelve two-year fellows recruited from around the world who specialized in fields ranging from the microbiology of extreme environments to the current and past dynamics of the deep Earth and the digital world of chemo informatics.  And then there was Hoyal Cuthill, whose field is paleobiology, with a heavy emphasis on evolution.… Read more

Diamonds and Science: The Deep Earth, Deep Time, and Extraterrestrial Crystal Rain

Deep Earth diamond with garnet inside.  These inclusions, which occur during the diamond formation process, provide not only a way to date the diamonds, but also a window into conditions in deep Earth when they wee formed.  (M. Gress, VU Amsterdam)

We all know that cut diamonds sparkle and shine, one of the great aesthetic creations from nature.

Less well known is that diamonds and the bits of minerals, gases and water encased in them offer a unique opportunity to probe the deepest regions of our planet.

Thought to be some of the oldest available materials found on Earth — some dated at up to 3.5 billion years old — they crystallize at great depth and under great pressure.

But from the point of view of those who study them, it’s the inclusions that loom large because allow them to know the age and depth of the diamond’s formation. And some think they can ultimately provide important clues to major scientific questions about the origin of water on Earth and even the origin of life.

The strange and remarkable subterranean world where the diamonds are formed has, of course, never been visited, but has been intensively studied using a variety of indirect measurements.  And this field has in recent weeks gotten some important discoveries based on those diamond inclusions.

First is the identification by Fabrizio Nestola of the Department of Geosciences at the University of Padua and colleagues of a mineral that has been theorized to be the fourth most  common on Earth, yet had never been found in nature or successfully synthesized in a laboratory.  As reported in the journal Nature, the mineral is a variant of calcium silicate (CaSiO3), created at a high pressure that gives it a uniquely deep-earth crystal structure called “perovskite,” which is the name of a mineral, too.

Mineral science does not allow a specimen to be named until it has actually been found in name, and now this very common form of mineral finally will get a name. But more important, it moves forward our understanding of what happens far below the Earth’s surface.



Where diamonds are formed and found on Earth. The super-deep are produced very far into the mantle and are pushed up by volcanoes and convection  The lithospheric diamonds are from the rigid upper mantle and crust and the alluvial diamonds are those which came to the surface and then were transported elsewhere by natural forces.

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To Understand Habitability, We Need to Return to Venus

This image shows the night side of Venus in thermal infrared. It is a false-color image using data from the Japanese spacecraft Akatsuki’s IR2 camera in two wavelengths, 1.74 and 2.26 microns. Darker regions denote thicker clouds, but changes in color can also denote differences in cloud particle size or composition from place to place.  JAXA / ISAS / DARTS / Damia Bouic

“You can feel what it’s like on Venus here on Earth,” said Kevin McGouldrick from the Laboratory for Atmospheric and Space Physics at the University of Colorado, Boulder. “Heat a hot plate until it glows red, place your palm on its surface and then run over that hand with a truck.”

The surface of Venus is a hellish place. Suffocated by a thick atmosphere, pressure on the Venusian surface is 92 times greater than on the surface of Earth. Temperatures sit at a staggering 863°F (462°C), which is sufficient to melt lead.

The longest a spacecraft has survived in these conditions is a mere 127 minutes; a record set by the Russian Venera 13 mission over 35 years ago.

As the brightest planet in the night sky, Venus allured ancient astronomers into naming the world after the Roman mythological goddess of love and beauty. This now seems an ironic choice, but the contrast between distant observation and surface conditions produces an apt juxtaposition for exoplanets.

The comparison has led to an article in Nature Geoscience by McGouldrick and a nine author white paper advising on astrobiology strategy for the National Science Foundation. The conclusion of both publications echoes the irony of Venus’s name: we need to return to the inferno of Venus to understand habitable worlds.

A portion of western Eistla Regio is displayed in this three-dimensional perspective view of the surface of Venus. Synthetic aperture radar data from the spacecraft Magellan is combined with radar altimetry to develop a three-dimensional map of the surface. Rays cast in a computer intersect the surface to create a three-dimensional perspective view.  The simulated hues are based on color images recorded by the Soviet Venera 13 and 14 spacecraft. The image, a frame from a video released in 1991, was produced at NASA’s JPL Multimission Image Processing Laboratory.

In the last 25 years, scientists have discovered over 3,500 extrasolar planets. The vast majority of these worlds have not been imaged directly, but are detected by tiny influences on their host star.… Read more

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