Betül Kaçar is an assistant professor at the University of Arizona, and a pioneer in the field of paleogenomics — using genetic material to dive back deep into the ancestry of important compounds. (University of Arizona)

Paleontology has for centuries worked to understand the distant past by digging up fossilized remains and analyzing how and why they fit into the evolutionary picture.  The results have been impressive.

But they have been limited.  The evolutionary picture painted relies largely on the discovery of once hard-bodied organisms, with a smattering of iconic finds of soft-bodied creatures.

In recent years, however, a new approach to understanding the biological evolution of life has evolved under the umbrella discipline of paleogenomics.  The emerging field explores ancient life and ancient Earth by focusing on genetic material from ancient organisms preserved in today’s organisms.

These genes can be studied on their own or can be synthetically placed into today’s living organisms to see if, and how, they change behavior.

The goals are ambitious:  To help understand both the early evolution and even the origins of life, as well as to provide a base of knowledge about likely characteristics of potential life on other planets or moons.

“What we do is treat DNA as a fossil, a vehicle to travel back in time,” said Betül Kaçar, an assistant professor at the University of Arizona with more than a decade of experience in the field, often sponsored by the NASA Astrobiology Program and the John Templeton Foundation.  “We build on modern biology, the existing genes, and use what we know from them to construct a molecular tree of life and come up with the ancestral genes of currently existing proteins.”

And then they ask the question of whether and how the expression of those genes — all important biomolecules generally involved in allowing a cell to operate smoothly — has changed over the eons.  It’s a variation on one the basic questions of evolution:  If the film of life were replayed from very early days, would it come out the same?

Cyanobacteria, which was responsible for the build-up of oxygen in the Earth’s atmosphere and the subsequent Great Oxidation Event about 2.5 billion years ago.  Kaçar studies and replaces key enzymes in the cyanobacteria in her effort to learn how those ancestral proteins may have behaved when compared to the same molecules today.

The possibility of such research — of taking what is existing today and reconstructing ancient sequences from it — was first proposed by Emile Zuckerkandl, a biologist known for his work in the 1960s with Linus Pauling on the hypothesis of the “molecular clock.”… Read more