Category: The Origin of Life (page 3 of 4)

Diamonds and Science: The Deep Earth, Deep Time, and Extraterrestrial Crystal Rain

Deep Earth diamond with garnet inside.  These inclusions, which occur during the diamond formation process, provide not only a way to date the diamonds, but also a window into conditions in deep Earth when they wee formed.  (M. Gress, VU Amsterdam)

We all know that cut diamonds sparkle and shine, one of the great aesthetic creations from nature.

Less well known is that diamonds and the bits of minerals, gases and water encased in them offer a unique opportunity to probe the deepest regions of our planet.

Thought to be some of the oldest available materials found on Earth — some dated at up to 3.5 billion years old — they crystallize at great depth and under great pressure.

But from the point of view of those who study them, it’s the inclusions that loom large because allow them to know the age and depth of the diamond’s formation. And some think they can ultimately provide important clues to major scientific questions about the origin of water on Earth and even the origin of life.

The strange and remarkable subterranean world where the diamonds are formed has, of course, never been visited, but has been intensively studied using a variety of indirect measurements.  And this field has in recent weeks gotten some important discoveries based on those diamond inclusions.

First is the identification by Fabrizio Nestola of the Department of Geosciences at the University of Padua and colleagues of a mineral that has been theorized to be the fourth most  common on Earth, yet had never been found in nature or successfully synthesized in a laboratory.  As reported in the journal Nature, the mineral is a variant of calcium silicate (CaSiO3), created at a high pressure that gives it a uniquely deep-earth crystal structure called “perovskite,” which is the name of a mineral, too.

Mineral science does not allow a specimen to be named until it has actually been found in name, and now this very common form of mineral finally will get a name. But more important, it moves forward our understanding of what happens far below the Earth’s surface.



Where diamonds are formed and found on Earth. The super-deep are produced very far into the mantle and are pushed up by volcanoes and convection  The lithospheric diamonds are from the rigid upper mantle and crust and the alluvial diamonds are those which came to the surface and then were transported elsewhere by natural forces.

Read more

False Positives, False Negatives; The World of Distant Biosignatures Attracts and Confounds

This artist’s illustration shows two Earth-sized planets, TRAPPIST-1b and TRAPPIST-1c, passing in front of their parent red dwarf star, which is much smaller and cooler than our sun. NASA’s Hubble Space Telescope looked for signs of atmospheres around these planets. (NASA/ESA/STScI/J. de Wit, MIT)

What observations, or groups of observations, would tell exoplanet scientists that life might be present on a particular distant planet?

The most often discussed biosignature is oxygen, the product of life on Earth.  But while oxygen remains central to the search for biosignatures afar, there are some serious problems with relying on that molecule.

It can, for one, be produced without biology, although on Earth biology is the major source.  Conditions on other planets, however, might be different, producing lots of oxygen without life.

And then there’s the troubling reality that for most of the time there has been life on Earth, there would not have been enough oxygen produced to register as a biosignature.  So oxygen brings with it the danger of both a false positive and a false negative.

Wading through the long list of potential other biosignatures is rather like walking along a very wet path and having your boots regularly pulled off as they get captured by the mud.  Many possibilities can be put forward, but all seem to contain absolutely confounding problems.

With this reality in mind, a group of several dozen very interdisciplinary scientists came together more than a year ago in an effort to catalogue the many possible biosignatures that have been put forward and then to describe the pros and the cons of each.

“We believe this kind of effort is essential and needs to be done now,” said Edward Schwieterman, an astronomy and astrobiology researcher at the University of California, Riverside (UCR).

“Not because we have the technology now to identify these possible biosignatures light years away, but because the space and ground-based telescopes of the future need to be designed so they can identify them. ”

“It’s part of what may turn out to be a very long road to learning whether or not we are alone in the universe”.


Artistic representations of some of the exoplanets detected so far with the greatest potential to support liquid surface water, based on their size and orbit.  All of them are larger than Earth and their composition and habitability remains unclear. They are ranked here from closest to farthest from Earth. 

Read more

2.5 Billion Years of Earth History in 100 Square Feet

Scalding hot water from an underground thermal spring creates an iron-rich environment similar to what existed on Earth 2.5 billion years ago. (Nerissa Escanlar)

Along the edge of an inlet on a tiny Japanese island can be found– side by side – striking examples of conditions on Earth some 2.4 billion years ago, then 1.4 billion years ago and then the Philippine Sea of today.

First is a small channel with iron red, steaming and largely oxygen-free water – filled from below with bubbling liquid above 160 degrees F. This was Earth as it would have existed, in a general way, as oxygen was becoming more prevalent on our planet some 2.4 billion years ago. Microbes exist, but life is spare at best.

Right next to this ancient scene is region of green-red water filled with cyanobacteria – the single-cell creatures that helped bring masses of oxygen into our atmosphere and oceans.  Locals come to this natural “onsen” for traditional hot baths, but they have to make their way carefully because the rocky floor is slippery with green mats of the bacteria.

And then there is the Philippine Sea, cool but with spurts of warm water shooting up from below into the cove.

All of this within a area of maybe 100 square feet.

It is a unique hydrothermal scene, and one recently studied by two researchers from the Earth-Life Science Institute in Tokyo – evolutionary microbiologist Shawn McGlynn and ancient virus specialist Tomohiro Mochizuki.

They were taking measurements of temperature, salinity and more, as well as samples of the hot gas and of microbial life in the iron-red water. Cyanobacterial mats are collected in the greener water, along with other visible microbe worlds.

Shawn McGlynn, associate professor at the Earth Life Science Institute in Tokyo scoops some iron-rich water from a channel on Shikine-jima Island, 100 miles from Tokyo. (Nerissa Escanlar)

The scientific goals are to answer specific questions – are the bubbles the results of biology or of geochemical processes? What are the isotopic signatures of the gases? What microbes and viruses live in the super-hot sections? And can cyanobacteria and iron co-exist?

All are connected, though, within the broad scientific effort underway to ever more specifically understand conditions on Earth through the eons, and how those conditions can help answer fundamental questions of how life might have begun.

“We really don’t know what microbiology looked like 2.5 billion or 1.5 billion years ago,” said McGlynn, “But this is a place we can go where we can try to find out.… Read more

Could High-Energy Radiation Have Played an Important Role in Getting Earth Ready For Life?

A version of this article first appeared in Astrobiology Magazine,

The fossil remains of a natural nuclear reactor in Oklo, Gabon.  It entered a fission state some 2 billion years ago, and so would not have been involved in any origin of life scenario.  But is a proof of concept that these natural reactors have existed and some were widespread on earth Earth.  It is but one possible source of high energy particles on early Earth. The yellow rock is uranium oxide. (Robert D. Loss, Curtin University, Australia)

Life on early Earth seems to have begun with a paradox: while life needs water as a solvent, the essential chemical backbones of early life-forming molecules fall apart in water. Our universal solvent, it turns out, can be extremely corrosive.

Some have pointed to this paradox as a sign that life, or the precursor of life, originated elsewhere and was delivered here via comets or meteorites. Others have looked for solvents that could have the necessary qualities of water without that bond-breaking corrosiveness.

In recent years the solvent often put forward as the eligible alternative to water is formamide, a clear and moderately irritating liquid consisting of hydrogen, carbon, nitrogen and oxygen. Unlike water, it does not break down the long-chain molecules needed to form the nucleic acids and proteins that make up life’s key initial instruction manual, RNA. Meanwhile it also converts via other useful reactions into key compounds needed to make nucleic acids in the first place.

Although formamide is common in star-forming regions of space, scientists have struggled to find pathways for it to be prevalent, or even locally concentrated, on early Earth. In fact, it is hardly present on Earth today except as a synthetic chemical for companies.

New research presented by Zachary Adam, an earth scientist at Harvard University, and Masashi Aono, a complex systems scientist at Earth-Life Science Institute (ELSI) at Tokyo Institute of Technology, has produced formamide by way of a surprising and reproducible pathway: bombardment with radioactive particles.


In a room fitted for cobalt-60 testing on the campus of the Tokyo Institute of Technology, a team of researchers gather around the (still covered) cobalt-60 and vials of the chemicals they were testing. The ELSI scientists are (from left) Masashi Aono,  James Cleaves, Zachary Adam and Riquin Yi.  (Isao Yoda)

The two and their colleagues exposed a mixture of two chemicals known to have existed on early Earth (hydrogen cyanide and aqueous acetonitrile) to the high-energy particles emitted from a cylinder of cobalt-60, an artificially produced radioactive isotope commonly used in cancer therapy.… Read more

Messy Chemistry: A New Way to Approach the Origins of Life

Astrobiologist and chemist Irena Mamajanov and prebiotic chemist Kuhan Chandru in their messy chemistry garb at the Earth-Life Science Institute (ELSI) in Tokyo. Mamajanov leads an effort at the institute to study a new “messy” path to understanding how some prebiotic chemical systems led to building blocks of life on early Earth. (Nerissa Escanlar)

More than a half century ago, Stanley Miller and Harold Urey famously put water and gases believed to make up the atmosphere of early Earth into a flask with water, sparked the mix with an electric charge, and produced amino acids and other chemical building blocks of life.

The experiment was hailed as a ground-breaking reproduction of how the essential components of life may have been formed, or at least a proof of concept that important building blocks of life could be formed from more simple components.

Little discussed by anyone outside the origins of life scientific community was that the experiment also produced a lot of a dark, sticky substance, a gooey tar that covered the beaker’s insides. It was dismissed as largely unimportant and regrettable then, and in the thousands of parallel origins of life experiments that followed.

Today, however, some intrepid researchers are looking at the tarry residue in a different light.

Tarry residue from an experiment — a common result when organic compounds are heated.

Just maybe, they argue, the tar was equally if not more important as those prized amino acids (which, after all, were hidden away in the tar until they were extracted out.) Maybe the messy tar – produced by the interaction of organic compounds and an energy source — offers a pathway forward in a field that has produced many advances but ultimately no breakthrough.

Those now studying the tar call their research “messy chemistry,” as opposed to the “clean” chemistry that focused on the acclaimed organic compounds.

There are other centers where different versions of “messy chemistry” research are under way — including George Cody’s lab at the Carnegie Institution for Sciences and Nicholas Hud’s at the Georgia Institute of Technology — but it is probably most concentrated at the Earth-Life Science Institute in Tokyo (ELSI.)

There, messy chemistry is viewed as an ignored but promising way forward, and almost a call to arms.

“In classical origin-of-life synthetic chemistry and biology you’re looking at one reaction and analyzing its maximum result. It’s A+B = C+D,” said Irena Mamajanov, an astrobiologist with a background in chemistry who is now a principal investigator ELSI and head of the overall messy chemistry project.… Read more

Certain Big, Charged Molecules Are Universal to Life on Earth. Can They Help Detect It In The Far Solar System?


This article of mine, slightly tweaked for Many Worlds, first appeared today (July 6)  in Astrobiology Magazine,

NASA’s Cassini spacecraft completed its deepest-ever dive through the icy plume of Enceladus on Oct. 28, 2015. The spacecraft did not have instruments that could detect life, but missions competing for NASA New Frontiers funding will — raising the thorny question of how life might be detected. (NASA/JPL-Caltech)

As NASA inches closer to launching new missions to the Solar System’s outer moons in search of life, scientists are renewing their focus on developing a set of universal characteristics of life that can be measured.

There is much debate about what might be considered a clear sign of life, in part, because there are so many definitions separating the animate from the inanimate.

NASA’s prospective missions to promising spots on Europa, Enceladus and Titan have their individual approaches to detecting life, but one respected voice in the field says there is a better way that’s far less prone to false positives.

Noted chemist and astrobiologist Steven Benner says life’s signature is not necessarily found in the presence of particular elements and compounds, nor in its effects on the surrounding environment, and is certainly not something visible to the naked eye (or even a sophisticated camera).

Rather, life can be viewed as a structure, a molecular backbone that Benner and his group, Foundation for Applied Molecular Evolution (FfAME), have identified as the common inheritance of all living things. Its central function is to enable what origin-of-life scientists generally see as an essential dynamic in the onset of life and its increased complexity and spread: Darwinian evolution via transfer of information, mutation and the transfer of those mutations.

“What we’re looking for is a universal molecular bio-signature, and it does exist in water,” says Benner. “You want a genetic molecule that can change physical conditions without changing physical properties — like DNA and RNA can do.”

Steven Benner, director of the Foundation for Applied Molecular Evolution or FfAME. (SETI)

Looking for DNA or RNA on an icy moon, or elsewhere would presuppose life like our own — and life that has already done quite a bit of evolving.

A more general approach is to find a linear polymer (a large molecule, or macromolecule, composed of many repeated subunits, of which DNA and RNA are types) with an electrical charge. That, he said, is a structure that is universal to life, and it can be detected.… Read more

Nobel Laureate Jack Szostak: Exoplanets Gave The Origin of Life Field a Huge Boost

Jack Szostak, Nobel laureate and pioneering researcher in the origin-of-life field, was the featured speaker at a workshop this week at the Earth-Life Science Institute (ELSI) in Tokyo.  One goal of his Harvard lab is to answer this once seemingly impossible question:  was the origin of life on Earth essentially straight-forward and “easy,” or was it enormously “hard” and consequently rare in the universe. (Nerissa Escanlar)

Sometimes tectonic shifts in scientific disciplines occur because of discoveries and advances in the field.  But sometimes they occur for reasons entirely outside the field itself.  Such appears to be case with origins-of-life studies.

Nobel laureate Jack Szostak was recently in Tokyo to participate in a workshop at the Earth-Life Science Institute (ELSI) at the Tokyo Institute of Technology on “Reconstructing the Phenomenon of Life To Retrace the Emergence of Life.”

The talks were technical and often cutting-edge, but the backstory that Szostak tells of why he and so many other top scientists are now in the origins of life field was especially intriguing and illuminating in terms of how science progresses.

Those ground-shifting discoveries did not involve traditional origin-of-life questions of chemical transformations and pathways.  They involved exoplanets.

“Because of the discovery of all those exoplanets, astronomy has been transformed along with many other fields,” Szostak said after the workshop.

“We now know there’s a large range of planetary environments out there, and that has stimulated a huge amount of interest in where else in the universe might there be life.  Is it just here?  We know for sure that lots of environments could support life and we also would like to know:  do they?

“This has stimulated much more laboratory-based work to try to address the origins question.  What’s really important is for us to know whether the transition from chemistry to biology is easy and can happen frequently and anywhere, or are there one or many difficult steps that make life potentially very rare?”

In other words, the explosion in exoplanet science has led directly to an invigorated scientific effort to better understand that road from a pre-biotic Earth to a biological Earth — with chemistry that allows compounds to replicate, to change, to surround themselves in cell walls, and to grow ever more complex.

With today’s increased pace of research, Szostak said, the chances of finding some solid answers have been growing.  In fact, he’s quite optimistic that an answer will ultimately be forthcoming to the question of how life began on Earth.… Read more

The Magma Ocean and Us

A vast magma ocean covered the very early Earth in its late period of formation, the likely result of heat from impacts as materials large and small fell to Earth.  The magma ocean climbed to temperatures of 2000˚F and well above and reached depths of hundreds of miles.  Magma breaks the surface now only rarely in volcanic eruption, when it is called lava. This lava lake sits in Mount Nyiragongo, Democratic Republic of Congo. (National Geographic.)

In the late stages of the formation of Earth, the planet was a brutally hot, rough place.  But perhaps not precisely in the way you might imagine.

Most renderings of that time show red-hot lava flowing around craggy rocks, with meteorites falling and volcanoes erupting.  But according to those who study the time, the reality was rather different.

There was most likely no land much of the time, the medium to large meteorites arrived every few thousand years , and the surface was the consistency of a kind of room-temperature oil.  Of course it was not oil, since this was a pre-organic time.  Rather, it was mostly molten silicates and iron that covered the Earth in a “magma ocean.”

At its most extreme, the magma ocean may have been as deep in places as the radius of Mars.  And it would have created thick atmospheres of carbon dioxide, silica dust, other toxic gases and later water vapor.

While meteor impacts did play a major role in those earliest days, the dynamics of the magma ocean were more determined by the convection currents of the super-hot magma (2000 degrees F and more), the high winds blowing above the surface, the steam atmosphere it often created and ultimately by the cooling that over hundreds of million of years led to the formation of a solid crust.

There is a burgeoning scientific interest in the magma ocean, which is expected to be part of the formation of any terrestrial planet and some lunar formations.  The research focuses on the gaining an understanding of the characteristics and diversity of magma oceans, and increasingly on the potentially significant role it plays in the origin of life on Earth, and perhaps elsewhere.

The reason why is pretty simple:  life (i.e., biochemistry) emerged on Earth from geochemistry (i.e., rocks and sediment.)  Some of the earliest geochemistry occurred in the magma ocean, and so it makes sense to learn as much as possible about the very earliest conditions that ultimately led to the advent of biology.… Read more

Curiosity Has Found The Element Boron On Mars. That’s More Important Than You Might Think

ChemCam target Catabola is a raised resistant calcium sulfate vein with the highest abundance of boron observed so far. The red outline shows the location of the ChemCam target remote micro images (inset). The remote micro images show the location of each individual ChemCam laser point (red crosshairs) and the B chemistry associated with each point (colored bars). The scale bar is 9.2 mm or about 0.36 inches. Credit JPL-Caltech/MSSS/LANL/CNES-IRAP/William Rapin

Using its laser technology, the Curiosity ChemCam instrument located the highest abundance of boron observed so far on this raised calcium sulfate vein. The red outline shows the location of the ChemCam target remote micro images (inset). The remote micro images show the location of each individual ChemCam laser point (red crosshairs) and the additional chemistry associated with each point (colored bars).  JPL-Caltech/MSSS/LANL/CNES-IRAP/William Rapin

For years, noted chemist and synthetic life researcher Steven Benner has talked about the necessary role of the element boron in the origin of life.

Without boron, he has found, many of the building blocks needed to form the earliest self-replicating ribonucleic acid (RNA) fall apart when they come into contact with water, which is nonetheless needed for the chemistry to succeed. Only in the presence of boron, Benner found and has long argued, can the formation of RNA and later DNA proceed.

Now, to the delight of Benner and many other scientists, the Curiosity team has found boron on Mars.  In fact, as Curiosity climbs the mountain at the center of Gale Crater, the presence of boron has become increasingly pronounced.

And to make the discovery all the more meaningful to Benner, the boron is being found in rock veins.  So it clearly was carried by water into the fractures, and was deposited there some 3.5 billion years ago.

Combined with earlier detections of phosphates, magnesium, peridots, carbon and other essential elements in Gale Crater, Benner told me, “we have found on Mars an environment entirely consistent with a what we consider conducive for the origin of life.

“Is it likely that life arose?  I’d say yes…perhaps even, hell yes.  But it’s also true that an environment conducive to the formation of life isn’t necessarily one conducive to the long-term survival of life.”

The foreground of this scene from the Mastcam on NASA's Curiosity Mars rover shows purple-hued rocks near the rover's late-2016 location. The middle distance includes future destinations for the rover. Variations in color of the rocks hint at the diversity of their composition on lower Mount Sharp. Credits: NASA/JPL-Caltech/MSSS

The foreground of this scene from the Mastcam on NASA’s Curiosity Mars rover shows purplish rocks near the rover’s late-2016 location. The middle distance includes future destinations for the rover. Variations in color of the rocks hint at the diversity of their composition on lower Mount Sharp. NASA/JPL-Caltech/MSSS

Another factor in the Mars-as-habitable story from Benner’s view is that there has never been the kind of water world there that many believe existed on early Earth.

While satellites orbiting Mars and now Curiosity have made it abundantly clear that early Mars also had substantial water in the form of lakes, rivers, streams and perhaps an localized ocean, it was clearly never covered in water.… Read more

The Stellar Side of The Exoplanet Story

K2-33b, shown in this illustration, is one of the youngest exoplanets detected to date. It makes a complete orbit around its star in about five days. Credits: NASA/JPL-Caltech

K2-33b, shown in this illustration, is one of the youngest exoplanets detected to date. It makes a complete orbit around its star in about five days, and as a result its characteristics are very much determined by its host. (NASA/JPL-Caltech)


When it comes to the study of exoplanets, it’s common knowledge that the host stars don’t get much respect.

Yes, everyone knows that there wouldn’t be exoplanets without stars, and that they serve as the essential background for exoplanet transit observations and as the wobbling object that allows for radial velocity measurements that lead to new exoplanets discoveries.

But stars in general have been seen and studied for ever, while the first exoplanet was identified only 20-plus years ago.  So it’s inevitable that host stars have generally take a back seat to the compelling newly-found exoplanets that orbit them.

As the field of exoplanet studies moves forward, however, and tries to answer questions about the characteristics of the planets and their odds of being habitable, the perceived importance of the host stars is on the rise.

The logic:  Stars control space weather, and those conditions produce a space climate that is conducive or not so conducive to habitability and life.

Space weather consists of a variety of enormously energetic events ranging from solar wind to solar flares and coronal mass ejections, and their characteristics are defined by the size, variety and age of the star.  It is often said that an exoplanet lies in a “habitable zone” if it can support some liquid water on its surface, but absent some protection from space weather it will surely be habitable in name only.

A recognition of this missing (or at least less well explored) side of the exoplanet story led to the convening of a workshop this week in New Orleans on “The Impact of Exoplanetary Space Weather On Climate and Habitability.”

“We’re really just starting to detect and understand the secret lives of stars,”  said Vladimir Airapetian, a senior scientist at the Goddard Space Flight Center.  He organized the highly interdisciplinary workshop for the Nexus for Exoplanet Space Studies (NExSS,) a NASA initiative.

“What has become clear is that a star affects and actually defines the character of a planet orbiting around it,” he said.  “And now we want to look at that from the point of view of astrophysicists, heliophysicists, planetary scientists and astrobiologists.”

William Moore, principal investigator for a NASA-funded team also studying how host stars affect their exoplanets, said the field was changing fast and that “trying to understand those (space weather) impacts has become an essential task in the search for habitable planets.”… Read more

« Older posts Newer posts »

© 2021 Many Worlds

Theme by Anders NorenUp ↑